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1

Lipid-Dependent Regulation of Ion Channels and G Protein–Coupled Receptors: Insights from Structures and Simulations

Duncan, Anna L., Song, Wanling, Sansom, Mark S.P.

Journal:

Annual Review of Pharmacology

Year:

2020

Language:

english

File:

PDF, 3.23 MB

english, 2020

2

Carbon nanotube self-assembly with lipids and detergent: a molecular dynamics study

Wallace, E Jayne, Sansom, Mark S P

Journal:

Year:

2009

Language:

english

File:

PDF, 1.15 MB

english, 2009

3

Coarse-grained molecular dynamics simulations of membrane proteins and peptides

Peter J. Bond, John Holyoake, Anthony Ivetac, Syma Khalid, Mark S.P. Sansom

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 2.38 MB

english, 2007

4

Nothing to Sneeze at: A Full-Scale Computational Model of the Human Influenza Virion

Reddy, Tyler, Shorthouse, David, Parton, Daniel, Jefferys, Elizabeth, Fowler, Philip W., Chavent, Matthieu, Baaden, Marc, Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

5

Knowledge capture to inform sustainable maritime operations

Kuznetsov, Andrei, Dinwoodie, John, Gibbs, David, Sansom, Mark, Knowles, Harriet

Journal:

International Journal of Operations & Production Management

Year:

2017

Language:

english

File:

PDF, 624 KB

english, 2017

6

Sustainable Development of Maritime Operations in Ports

John Dinwoodie, Sarah Tuck, Harriet Knowles, James Benhin, Mark Sansom

Journal:

Business Strategy and the Environment

Year:

2012

Language:

english

File:

PDF, 143 KB

english, 2012

7

Three hydrolases and a transferase: Comparative analysis of active-site dynamics via the BioSimGrid database

Kaihsu Tai, Marc Baaden, Stuart Murdock, Bing Wu, Muan Hong Ng, Steven Johnston, Richard Boardman, Hans Fangohr, Katherine Cox, Jonathan W. Essex, Mark S.P. Sansom

Journal:

Journal of Molecular Graphics and Modelling

Year:

2007

Language:

english

File:

PDF, 545 KB

english, 2007

8

The properties of ion channels formed by zervamicins

P. Balaram, K. Krishna, M. Sukumar, I. R. Mellor, Mark S. P. Sansom

Journal:

European Biophysics Journal

Year:

1992

Language:

english

File:

PDF, 1.12 MB

english, 1992

9

Acquisition of siderophores in gram-negative bacteria

Faraldo-Gómez, José D., Sansom, Mark S. P.

Journal:

Nature Reviews Molecular Cell Biology

Year:

2003

Language:

english

File:

PDF, 1.74 MB

english, 2003

10

Multiscale methods for macromolecular simulations

Paul Sherwood, Bernard R Brooks, Mark SP Sansom

Journal:

Current Opinion in Structural Biology

Year:

2008

Language:

english

File:

PDF, 1.88 MB

english, 2008

11

Molecular Dynamics Simulations of the Dimerization of Transmembrane α-Helices

Psachoulia, Emi, Marshall, David P., Sansom, Mark S. P.

Journal:

Accounts of Chemical Research

Year:

2010

Language:

english

File:

PDF, 3.11 MB

english, 2010

12

Proteins accessible to immune surveillance show significant T-cell epitope depletion: Implications for vaccine design

Mark Halling-Brown, Raheel Shaban, Dan Frampton, Clare E. Sansom, Matthew Davies, Darren Flower, Melanie Duffield, Richard W. Titball, Vladimir Brusic, David S. Moss

Journal:

Molecular Immunology

Year:

2009

Language:

english

File:

PDF, 645 KB

english, 2009

13

Atlas of vertebrate decay: a visual and taphonomic guide to fossil interpretation

Sansom, Robert S., Gabbott, Sarah E., Purnell, Mark A., Orr, Patrick

Journal:

Year:

2013

Language:

english

File:

PDF, 3.77 MB

english, 2013

14

Secondary structure in oligomers of carbohydrate amino acids

Smith, Martin D., Claridge, Timothy D. W., Fleet, George W. J., Tranter, George E., Sansom, Mark S. P.

Journal:

Chemical Communications

Year:

1998

Language:

english

File:

PDF, 145 KB

english, 1998

15

Designing a Hydrophobic Barrier within Biomimetic Nanopores

Trick, Jemma. L., Wallace, E. Jayne, Bayley, Hagan, Sansom, Mark. S. P.

Journal:

Year:

2014

Language:

english

File:

PDF, 4.52 MB

english, 2014

16

MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes

Stansfeld, Phillip J., Goose, Joseph E., Caffrey, Martin, Carpenter, Elisabeth P., Parker, Joanne L., Newstead, Simon, Sansom, Mark S.P.

Journal:

Year:

2015

Language:

english

File:

PDF, 4.55 MB

english, 2015

17

Studies of the pore-forming domain of a voltage-gated potassium channel protein

Haris, Parvez I., Ramesh, Bala, Sansom, Mark S. P., Kerr, Ian D., Srai, Kaila S., Chapman, Dennis

Journal:

Protein Engineering Design and Selection

Year:

1994

Language:

english

File:

PDF, 3.09 MB

english, 1994

18

A NEW OSTEOSTRACAN FAUNA FROM THE DEVONIAN OF THE WELSH BORDERLANDS AND OBSERVATIONS ON THE TAXONOMY AND GROWTH OF OSTEOSTRACI

JOSEPH N. KEATING, ROBERT S. SANSOM and MARK A. PURNELL

Journal:

Journal of Vertebrate Paleontology

Year:

2012

Language:

english

File:

PDF, 4.97 MB

english, 2012

19

Experimental analysis of soft-tissue fossilization: opening the black box

Purnell, Mark A., Donoghue, Philip J. C., Gabbott, Sarah E., McNamara, Maria E., Murdock, Duncan J. E., Sansom, Robert S., Smith, Andrew

Journal:

Year:

2018

Language:

english

File:

PDF, 235 KB

english, 2018

20

A PIP 2 Binding Site on a Human TRP Channel: Simulation Studies of PKD2

Wang, Qinrui, Hedger, George, Aryal, Prafulla, Shi, Jiye, Carpenter, Elizabeth P., Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 44 KB

english, 2018

21

A heuristic derived from analysis of the ion channel structural proteome permits the rapid identification of hydrophobic gates

Rao, Shanlin, Klesse, Gianni, Stansfeld, Phillip J., Tucker, Stephen J., Sansom, Mark S. P.

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 1.31 MB

english, 2019

22

Water in Nanopores and Biological Channels: A Molecular Simulation Perspective

Lynch, Charlotte I., Rao, Shanlin, Sansom, Mark S. P.

Journal:

Chemical Reviews

Year:

2020

File:

PDF, 9.16 MB

2020

23

Structure and dynamics of the pore-lining helix of the nicotinic receptor: MD simulations in water, lipid bilayers, and transbilayer bundles

Richard J. Law, Lucy R. Forrest, Kishani M. Ranatunga, Paolo La Rocca, D. Peter Tieleman, Mark S.P. Sansom

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 1.07 MB

english, 2000

24

Transmembrane domains of viral ion channel proteins: A molecular dynamics simulation study

Wolfgang B. Fischer, Lucy R. Forrest, Graham R. Smith, Mark S. P. Sansom

Journal:

Year:

2000

Language:

english

File:

PDF, 300 KB

english, 2000

25

Viral ion channels: molecular modeling and simulation

Mark S.P. Sansom, Lucy R. Forrest, Richard Bull

Journal:

Year:

1998

Language:

english

File:

PDF, 381 KB

english, 1998

26

Dqβ polymorphism and genetic susceptibility to felty's syndrome

K. L. SO Alex, Catherine A. Warner, David Sansom, Mark J. Walport

Journal:

Arthritis & Rheumatism

Year:

1988

Language:

english

File:

PDF, 458 KB

english, 1988

27

Bioavailability of a new sustained-release theophylline capsule in fasted and non-fasted healthy subjects: Single and multiple dosing studies

Raelene J. West, Garth Boehm, Mark Dwyer, Desmond B. Williams, Lloyd N. Sansom, Antonio C. Penna

Journal:

Biopharmaceutics & Drug Disposition

Year:

1990

Language:

english

File:

PDF, 608 KB

english, 1990

28

Conformational dynamics of helix S6 from Shaker potassium channel: Simulation studies

Joanne N. Bright, Indira H. Shrivastava, Frank S. Cordes, Mark S. P. Sansom

Journal:

Year:

2002

Language:

english

File:

PDF, 257 KB

english, 2002

29

Coarse-Grain Simulations of the R-SNARE Fusion Protein in its Membrane Environment Detect Long-Lived Conformational Sub-States

Marie-Pierre Durrieu, Peter J. Bond, Mark S. P. Sansom, Richard Lavery, Marc Baaden

Journal:

Year:

2009

Language:

english

File:

PDF, 687 KB

english, 2009

30

Carbon nanotube/detergent interactions via coarse-grained molecular dynamics

Jayne Wallace, Mark Sansom

Journal:

Chemistry and Physics of Lipids

Year:

2007

Language:

english

File:

PDF, 48 KB

english, 2007

31

Membrane protein structure quality in molecular dynamics simulation

Richard J. Law, Charlotte Capener, Marc Baaden, Peter J. Bond, Jeff Campbell, George Patargias, Yalini Arinaminpathy, Mark S.P. Sansom

Journal:

Journal of Molecular Graphics and Modelling

Year:

2005

Language:

english

File:

PDF, 195 KB

english, 2005

32

HOLE: A program for the analysis of the pore dimensions of ion channel structural models

Oliver S. Smart, Joseph G. Neduvelil, Xiaonan Wang, B.A. Wallace, Mark S.P. Sansom

Journal:

Journal of Molecular Graphics

Year:

1996

Language:

english

File:

PDF, 758 KB

english, 1996

33

Secondary structure of an isolated P-region from the voltage-gated sodium channel: a molecular modelling/dynamics study

Pascal Cosette, Ian D. Kerr, Paolo La Rocca, Hervé Duclohier, Mark S.P. Sansom

Journal:

Biophysical Chemistry

Year:

1997

Language:

english

File:

PDF, 1.01 MB

english, 1997

34

Channels formed by the transmembrane helix of phospholamban: a simulation study

Mark S.P. Sansom, Graham R. Smith, Oliver S. Smart, Steven O. Smith

Journal:

Biophysical Chemistry

Year:

1997

Language:

english

File:

PDF, 1.25 MB

english, 1997

35

Interactions of α-helices with lipid bilayers: a review of simulation studies

Phil C Biggin, Mark S.P Sansom

Journal:

Biophysical Chemistry

Year:

1999

Language:

english

File:

PDF, 417 KB

english, 1999

36

Peptides and lipid bilayers: Dynamic interactions

Journal:

Current Opinion in Colloid & Interface Science

Year:

1998

Language:

english

File:

PDF, 1.06 MB

english, 1998

37

The pro-apoptotic K-Ras 4A proto-oncoprotein does not affect tumorigenesis in theApcMin/+mouse small intestine

Charles E Patek, Mark J Arends, Lorraine Rose, Feijun Luo, Marion Walker, Paul S Devenney, Rachel L Berry, Nicola J Lawrence, Rachel A Ridgway, Owen J Sansom, Martin L Hooper

Journal:

BMC Gastroenterology

Year:

2008

Language:

english

File:

PDF, 353 KB

english, 2008

38

Proline-induced hinges in transmembrane helices: Possible roles in ion channel gating

D. Peter Tieleman, Indira H. Shrivastava, Martin R. Ulmschneider, Mark S.P. Sansom

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 264 KB

english, 2001

39

Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations

José D. Faraldo-Gómez, Lucy R. Forrest, Marc Baaden, Peter J. Bond, Carmen Domene, George Patargias, Jonathan Cuthbertson, Mark S.P. Sansom

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 475 KB

english, 2004

40

Properties of integral membrane protein structures: Derivation of an implicit membrane potential

Martin B. Ulmschneider, Mark S.P. Sansom, Alfredo Di Nola

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 586 KB

english, 2005

41

Comparative molecular dynamics—Similar folds and similar motions?

Andrew Pang, Yalini Arinaminpathy, Mark S. P. Sansom, Philip C. Biggin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.25 MB

english, 2005

42

Modeling and simulations of a bacterial outer membrane protein: OprF from Pseudomonas aeruginosa

Syma Khalid, Peter J. Bond, Sundeep S. Deol, Mark S. P. Sansom

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 690 KB

english, 2006

43

Hydrophilic surface maps of channel-forming peptides: analysis of amphipathic helices

Ian D. Kerr, Mark S. P. Sansom

Journal:

European Biophysics Journal

Year:

1993

Language:

english

File:

PDF, 992 KB

english, 1993

44

Ion channels formed by amphipathic helical peptides

Mark S. P. Sansom, Ian D. Kerr, Ian R. Mellor

Journal:

European Biophysics Journal

Year:

1991

Language:

english

File:

PDF, 1.12 MB

english, 1991

45

The roles of serine and threonine sidechains in ion channels: a modelling study

Mark S. P. Sansom

Journal:

European Biophysics Journal

Year:

1992

Language:

english

File:

PDF, 1.49 MB

english, 1992

46

Characterization of a delayed rectifier K+channel in NG108-15 neuroblastomaXglioma cells: Gating kinetics and the effects of enrichment of membrane phospholipids with arachidonic acid

Richard McGee, Mark S. P. Sansom, Peter N. R. Usherwood

Journal:

Journal of Membrane Biology

Year:

1988

Language:

english

File:

PDF, 1.20 MB

english, 1988

47

Ion channels of biological membranes: prediction of single channel conductance

Kishani M. Ranatunga, Charlotte Adcock, Ian D. Kerr, Graham R. Smith, Mark S. P. Sansom

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

1999

Language:

english

File:

PDF, 333 KB

english, 1999

48

Lipidbook: A Public Repository for Force-Field Parameters Used in Membrane Simulations

Jan Domański, Phillip J. Stansfeld, Mark S. P. Sansom, Oliver Beckstein

Journal:

Journal of Membrane Biology

Year:

2010

Language:

english

File:

PDF, 172 KB

english, 2010

49

Free energy of a potassium ion in a model of the channel formed by an amphipathic leucine-serine peptide

Graham R. Smith, Mark S. Sansom

Journal:

European Biophysics Journal

Year:

2002

Language:

english

File:

PDF, 326 KB

english, 2002

50

Molecular dynamics simulations and KcsA channel gating

Indira H. Shrivastava, Mark S. Sansom

Journal:

European Biophysics Journal

Year:

2002

Language:

english

File:

PDF, 272 KB

english, 2002

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